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Topia!: Science: Biology: Genetics: Software (43)
The BioCatalog - Software directory of general interest in molecular biology and genetics. MuStaR Sequence Variant Database Software - Designed to create a database of mutation loci, to make this information available to as many people as possible. TagSorter - Database application designed to simplify the collation, sorting, comparison and identification of SAGE tag sequences. PopGen - Software that models population genetics with emphasis on genetic drift, selection, and migration. Linkage Analysis Software List - Extensive list of linkage, mapping and pedigree software with links for obtaining copies. Sewall Wright Institute - Linkage Links - Page of links to information and software for linkage and gene mapping. Progeny Software - Supply pedigree drawing and genetic data management software for genetic research with a built-in customizable relational database. DRIFT - Graphically represents the effect of genetic drift on gene frequency of one or more populations for a single locus, two allele model in a closed population using stochastic simulation methods. The DOS program is free. Genetic Network Maps as Java Applets - Genetic networks controlling development in Sea Urchin represented as Java applets. Formal scheme. Molecular interactions modelled as Petri Net. Hands on Genetics - Instructional software for basic genetics, such as DNA, PCR, Mendel, Hardy-Weinberg, meiosis and computer simulations. Download WIN and MAC demos and order online. Advanced Genetics Wizard - Online program that calculates the distribution of offspring genotypes from dominant, codominant and recessive gene crosses, for up to 6 genes. Genetics Software - RASA 2.2 and other Mac software for phylogenetics, comparative genomics, and sequence analysis - from Penn State University. Applied Biosystems - Integrated software product designed to provide automation, high throughput, and high allele-calling accuracy for linkage mapping and human identification applications. Windows NT . Istituto di Genetica Biochimica ed Evoluzionistica - Program that performs a permutation-based statistical test to detect genetic divergence among populations from DNA fingerprinting data . Downloadable source Fortran code, executable files and user manual . Big Bench Software - Database application designed for transgenic mouse colonies. A complete colony management software solution for Macintosh . Downloadable demo version . Alice Software - Database system to build and publish synonymised checklists of species. Species descriptions include pre-established fields and detailed descriptions employing any number of user-defined fields. STRand - Open-source program to automate or speed up the analysis of DNA fragment length polymorphism samples run on fluorescence based gels . Instructions for use and program download available . Genetic Linkage Analysis - Offers links and other resources for genetic analysis software from The Rockefeller University. Whitehead Institute Center for Genome Research - Follow the links for GeneHunter, MapMaker, Primer, and RHMapper documentation and free software, in UNIX and C source code. MapPop - Software for selective mapping and bin mapping by Daniel Brown and Todd Vision. WIN version, documentation and references are available here. Contentsoft AG - Offers microarray data mining software for Windows platform featuring double conjugated clustering and SVD sorting methods. Includes a free trial version. GeneticStudio - A complete suite of population genetic analysis programs for MAC. Includes plugin modules. PowerSSR - Set of statistical methods for discrete genetic data analysis, designed especially for microsatellite data analysis. Includes downloadable versions for Windows and Linux. The Darwin Manual - Guide and list of commands used to run this programming language. Library contains programs to compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make secondary structure predictions. Statistical Genetics Software - Collection of primarily Fortan programs for genetic analysis. Requires registration to download. High Performance Computing and Informatics Office - US National Institutes of Health site with extensive genetic linkage analysis application resources on high performance computer systems. Formerly the Computational Methods and Algorithms Group.
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